Software development

Programming paradigms

• MPI distributed programming
  • Purpose
  • Some background information
  • Prerequisites
  • Implementations
  • Compiling and running
  • Debugging
  • Profiling
  • Further information
• OpenMP for shared memory programming
  • Purpose
  • Prerequisites
  • Implementations
  • Compiling OpenMP code
  • Running OpenMP programs
  • Further information
• Hybrid MPI/OpenMP programs
  • Preparing your hybrid application to run
  • Running hybrid programs on the VSC clusters
  • Script mympirun (VSC)
  • Intel toolchain (Intel compilers and Intel MPI)
  • FOSS toolchain (GCC and Open MPI)

Development tools

• Toolchains
  • What are toolchains?
  • Available toolchains at the VSC
• Intel toolchain
  • Compilers: Intel and GNU
  • Communication library: Intel MPI
  • Intel mathematical libraries
  • Intel toolchain version numbers
  • Further information on Intel tools
• FOSS toolchain
  • Compilers: GNU
  • Communication library: Open MPI
  • FOSS mathematical libraries
  • Version numbers
  • Further information on FOSS components
• Intel Trace Analyzer & Collector
  • Purpose
  • Prerequisities
  • Step by step
  • Further information
• ParameterWeaver
  • Introduction & motivation
  • High-level overview & concepts
  • Language specific documentation
  • Future work
  • Contact & support
• Version control systems
  • Why use a version control system?
  • Types of version control systems
  • Cloud services
  • Which one should I use?

Libraries

• BLAS and LAPACK
• Perl package management
• Python package management
• R package management

Integrating code with software packages

• R integrating C functions
  • Purpose
  • Prerequisites
  • Integration step by step
  • Further reading